SNP Profiles matching PA 289 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	CC	GG	CT	AC	CC	AA	CC	AA	GG	AA	AA	CC
1._RUQ_852	_	_	CC	GG	CT	AC	CC	AA	CC	AA	_	AA	AA	CC
2._PA_52_[PER]	GG	AT	AC	GG	CC	AC	-	AA	CC	AA	GG	AA	AA	CC
3._EET_400_[ECU]	GG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AA	AC	CC
4._PA_53_[PER]	GG	AT	CC	GG	CC	AC	-	AA	CC	AA	GG	AA	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	GG	CC	TT	AA	TT	GG	CC	CC	TT	CG	AA	TT	AA
1._RUQ_852	TT	GG	CC	TT	_	_	GG	CC	CC	_	_	_	_	GG
2._PA_52_[PER]	GT	CG	CC	TT	AA	TT	GG	CC	CC	CC	-	AA	-	AA
3._EET_400_[ECU]	TT	GG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CT	AG
4._PA_53_[PER]	GT	CG	AC	TT	AA	TT	GG	CC	CC	CT	CG	AA	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	GG	CC	X_X
1._RUQ_852	CC	_	_	_	_	TT	_	_	_	CT	CG	GG	_	X_X
2._PA_52_[PER]	CC	GG	AA	-	CC	TT	CT	-	TT	CT	GG	GG	CC	X_X
3._EET_400_[ECU]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CC	GG	AG	CC	X_X
4._PA_53_[PER]	CC	GG	AA	CC	CC	TT	CC	CC	TT	CT	GG	GG	CC	X_X

Input profile: PA_289_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 803

Dapeng Zhang, 2014

1._PA_120_[PER] RUQ_852

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_52_[PER]

91.7 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D310 T8

Dapeng Zhang, 2014

3._EET_400_[ECU]

91 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

4._PA_53_[PER]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 243

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1144	33	TcSNP1165	34	TcSNP1253	35	TcSNP1270
36	TcSNP1350	37	TcSNP1414	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484
41	TcSNP1520

SNP Profiles matching PA 289 [PER]

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Input profile: PA_289_[PER]

1._PA_120_[PER] RUQ_852

91.7 % 24 shared markers

2._PA_52_[PER]

91.7 % 36 shared markers

3._EET_400_[ECU]

91 % 39 shared markers

4._PA_53_[PER]

90 % 40 shared markers

91.7 %
24 shared markers

91.7 %
36 shared markers

91 %
39 shared markers

90 %
40 shared markers